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Publications 2005

1. Allen S, Read S, DiPaolo R, McHugh RS, Shevach EM, Gleeson PA, van Driel IR. (2005) 'Promiscuous thymic expression of an autoantigen gene does not result in negative selection of pathogenic T cells', J Immunol, 175(9), 5759-5764.
2. Aguilar MI, Purcell AW. (2005) 'Peptides: Structure analysis' in Worsfold P, Townshend A, Poole C. (Eds) The Encyclopaedia of Analytical Science, Second Edition, Elsevier, Oxford, Vol 7, p29-30. Baxter AG, Jordan MA, Silveira PA, Wilson WE, van Driel IR. (2005) 'Genetic control of susceptibility to autoimmune gastritis', Int Rev Immunol, 24(1-2), 55-62. (Review).
3. Bingham J-P, Broxton NM, Livett BG, Down JG, Jones A, Moczydlowski EG. (2005) 'Optimizing the connectivity in disulfide-rich peptide: a-conotoxin SII as a case study', Anal Biochem, 338, 48-61.
4. Borg NA, Ely LK, Beddoe T, Macdonald WA, Reid HH, Clements CS, Purcell AW, Kjer-Nielsen L, Miles JJ, Burrows SR, McCluskey J, Rossjohn J. (2005) 'The CDR3 hypervariable regions of an immunodominant alpha beta T cell receptor dictate the energetic landscape of cognate MHCp recognition', Nature Immunol, 6(2), 171-180.
5. Brazier MW, Lewis V, Ciccotosto GD, Klug GM, Lawson VA, Cappai R, Ironside JW, Masters CL, Hill AF, White AR, Collins SJ. (2005) 'Correlative studies support lipid peroxidation is linked to PrP^scrapie propagation as an early primary pathogenic event in prion disease', Brain Res Bull. (published online 8th October).
6. Burri L, Strahm Y, Hawkins CJ, Gentle IE, Puryer MA, Verhagen A, Callus B, Vaux D, Lithgow T. (2005) 'Mature DIABLO/Smac is produced by the IMP protease complex on the mitochondrial inner membrane', Mol Biol Cell, 16, 2926-2933.
7. Cappai R, Leck S-L, Tew DJ, Williamson NA, Smith DP, Galatis D, Sharples RA, Curtain CC, Ali FE, Cherny RA, Culvenor JG, Bottomley SP, Masters CL, Barnham KJ, Hill AF. (2005) 'Dopamine promotes alpha–synuclein aggregation into SDS-resistant soluble oligomers via a distinct folding pathway', FASEB Journal, 19(10):1377-1379.
8. Clayton AH, Atcliffe BW, Howlett GJ, Sawyer WH. (2005) Conformation and orientation of penetratin in phospholipid membranes', J Pept Sci, Sep 13, [Epub ahead of print].
9. Chong YP, Ia KK, Mulhern TD, Cheng HC. (2005) 'Endogenous and synthetic inhibitors of the Src-family protein tyrosine kinases, Biochim Biophys Acta, [Epub ahead of print].
10. Chong YP, Mulhern TD, Cheng HC. (2005) 'C-terminal Src kinase (CSK) and CSK-homologous kinase (CHK)-endogenous negative regulators of Src-family protein kinases', Growth Factors, 23(3), 233-244. (Review).
11. Clayton AHA, Atcliffe BW, Howlett GJ, Sawyer WH. (2005) 'Conformation and orientation of the third helix of Antennapedia in lipid membranes', J Peptide Sci, In press online.
12. Clayton AH, Perugini MA, Weinstock J, Rothacker J, Watson KG, Burgess AW, Nice EC. (2005) 'Fluorescence and analytical ultracentrifugation analyses of the interaction of the tyrosine kinase inhibitor, tyrphostin AG 1478-mesylate, with albumin', Anal Biochem, 342(2), 292-299.
13. Collins SJ, Lewis V, Brazier MW, Hill AF, Lawson VA, Klug GM, Masters CL. (2005) 'Extended period of asymptomatic prion disease after low dose inoculation: Assessment of detection methods and implications for infection control', Neurobiol Dis, 20(2), 336-346.
14. Dolezal P, Smíd O, Rada P, Zubácová Z, Suták R, Nebesárová J, Bursa D, Lithgow T, Tachezy J. (2005) 'Giardia mitosomes and trichomonad hydrogenosomes share a common mode of protein targeting', Proc Natl Acad Sci, (USA) 102, 10924-10929.
15. El-Hassen D, Miles JJ, Borg NA, Silins SL, Tynan FE, Burrows JM, Purcell AW, Kjer-Nielsen L, Rossjohn J, Burrows SR, McCluskey J. (2005) 'CTL recognition of a bulged viral peptide involves biased T-cell receptor selection', J Immunol, 175, 3826-3834.
16. Ely LK, Green K.J, Beddoe T, Clements CS, Milesï, JJ, Bottomley SP, Zernich D, Kjer-Nielsen L, Purcell AW, McCluskey J, Rossjohn J, Burrows SR. (2005) 'Antagonism of antiviral and allogeneic activity of a human public CTL clonotype by a single altered peptide ligand: implications for allograft rejection', J Immunol, 174, 5593-5601.
17. Fairlie WD, Perugini MA, Kvansakul M, Chen L, Huang DC, Colman PM. (2005) 'CED-4 forms a 2 : 2 heterotetrameric complex with CED-9 until specifically displaced by EGL-1 or CED-13', Cell Death Differ, Sep 16; [Epub ahead of print].
18. Franic TV, van Driel IR, Gleeson PA, Giraud AS, Judd LM.(2005) 'Reciprocal changes in trefoil 1 and 2 expression in stomachs of mice with gastric unit hypertrophy and inflammation', J Pathol, 207(1), 43-52.
19. Gayler K, Sandall D, Greening D, Down J, Keays D, Livett B. (2005) 'Molecular prospecting for drugs from the sea', IEEE Eng Med and Biol Mag, 24, 79-84.
20. Gentle IE, Burri L, Lithgow T. (2005) 'Molecular architecture and function of the Omp85 family of proteins', Mol Microbiol, 58, 1216-1225.
21. Hildebrand MS, Dahl HH, Hardman J, Coleman B, Shepherd RK, de Silva MG. (2005) 'Survival of partially differentiated mouse embryonic stem cells in the scala media of the guinea pig cochlea', J Assoc Res Otolaryngol, Oct 6, 1-14 [Epub ahead of print].
22. Haites RE, Morita YS, McConville MJ, Billman-Jacobe H. (2005) 'Function of phosphatidylinositol in mycobacteria', J Biol Chem, 280(12), 10981-10987.
23. Hildebrand MS, de Silva MG, Klockars T, Solares CA, Hirose K, Smith JD, Patel SC, Dahl HH. (2005) 'Expression of the carrier protein apolipoprotein D in the mouse inner ear', Hear Res, 200(1-2), 102-114.
24. Hill EK, Krebs B, Goodall DG, Howlett GJ, Dunstan DE. (2005) 'Shear flow induces amyloid fibril formation', Biomacromolecules, ASAP Article 10.1021/bm0505078 S1525-7797(05)00507-6 Web Release December 2.
25. Hopkins EJ, Bathgate RA, Gooley PR. (2005) 'The human LGR7 low-density lipoprotein class A module requires calcium for structure', Ann N Y Acad Sci, 1041, 27-34.
26. Hou X, Richardson SJ, Aguilar M-I, Small DH. (2005) 'Binding of amyloidogenic transthyretin to the plasma membrane alters membrane fluidity and induces neurotoxicity', Biochem, 44, 11618-11627.
27. Kerr MC, Bennetts JS, Simpson F, Thomas EC, Flegg C, Gleeson PA, Wicking C, Teasdale RD. (2005) 'A novel mammalian retromer component, Vps26B', Traffic, 6(11), 991-1001.
28. Lawson VA, Collins SJ, Masters CL, Hill AF. (2005) 'Prion protein glycosylation', J Neurochem, 93, 793-801.
29. Lewis V, Hill AF, Klug G, Boyd A, Masters CL, Collins SJ. (2005) 'Analysis of Australian sporadic CJD supports non-environmental determinants of molecular-clinical profiles', Neurology, 65(1), 113-118.
30. Likic VA, Perry A, Hulett J, Traven A, Waller RF, Keeling PJ, Koehler CM, Curran SP, Gooley PR, Lithgow T. (2005) 'Patterns that define the four domains conserved in known and novel isoforms of the protein import receptor Tom20', J Mol Biol, 347, 81-93.
31. Likic VA, Gooley PR, Speed TP, Strehler EE. (2005) 'A statistical approach to the interpretation of molecular dynamics simulations of calmodulin equilibrium dynamics', Protein Sci, 14, 2955-2963.
32. Lister R, Hulett JM, Lithgow T, Whelan J. (2005) 'Protein import into mitochondria: endosymbiotic origins and functions today', Mol Membr Biol 22, 87-100.
33. Livett BG, Sandall DW, Keays D, Down J, Gayler KR, Satkunanathan N, Khalil Z. (2005). 'Marine toxins targeting neuronal receptors and ion channels: Therapeutic applications of the conotoxins. In “Toxicology in Australia Pioneers to Frontiers” (Editors, Raymond S. Norton & Kenneth D. Winkel). Final form 13/7/05 (In Press).
34. Lock JG, Hammond LA, Houghton F, Gleeson PA, Stow JL. (2005) 'E-cadherin transport from the trans-Golgi network in tubulovesicular carriers is selectively regulated by golgin-97', Traffic, 6(12), 1142-1156.
35. Luke MR, Houghton F, Perugini MA, Gleeson PA. (2005) 'The trans-Golgi network GRIP-domain proteins form alpha-helical homodimers', Biochem J, 388(Pt 3), 835-841.
36. Mannering SI, Harrison LC, Williamson NA, Morris JS, Thearle DJ, Jensen KP, Falk BA, Nepom GT, Kay TWH, Rossjohn J, Purcell AW. (2005) 'A human T-cell epitope in insulin created by post-translational modification', J Exp Med, 202, 1191-1197.
37. Masters SL, Howlett GJ, Pau RN. (2005) 'The molybdate binding protein Mop from Haemophilus influenzae-biochemical and thermodynamic characterisation', Arch Biochem Biophys, 439(1), 105-112.
38. Mertens HDT, Gooley PR. (2005) 'Validating the use of database potentials in protein structure determination by NMR', FEBS Letters, 579, 5542-5548.
39. Miller RE, McConville MJ, Woodrow IE. (2005) 'Cyanogenic glycosides from the rare Australian endemic rainforest tree Clerodendrum grayi (Lamiaceae)', Phytochemistry, Nov 21; [Epub ahead of print].
40. Morita YS, Velasquez R, Taig E, Waller RF, Patterson JH, Tull D, Williams SJ, Billman-Jacobe H, McConville MJ. (2005) 'Compartmentalization of lipid biosynthesis in mycobacteria', J Biol Chem, 280, 21645-21652.
41. Ogrin R, Darzins P, Khalil Z. (2005) 'Age-related changes in microvascular blood flow and transcutaneous oxygen tension under Basal and stimulated conditions', J Gerontol A Biol Sci Med Sci, 60(2), 200-206.
42. Ogrin R, Darzins P, Khalil Z. (2005) 'Sensory nerves and diabetic peripheral neuropathy: basic assessments and a novel treatment', Inflammation Res, 54 (Supplemental 2), pS195, poster 7079.
43. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (Nov), 443-445.
44. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: There are many (biochemical) paths to the truth', Biochem Educ, 33 (Nov), 436.
45. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (Sep), 375-377.
46. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: Wiki: The fast way to collaborative authoring', Biochem Educ, 33 (Sep), 371.
47. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (Jul), 310-312.
48. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: Curtis Bonk about blended learning', Biochem Educ, 33 (Jul), 371.
49. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (May), 236-237.
50. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: Curtis Bonk and teaching and administering in stormy times, Biochem Educ, 33 (May), 234-235.
51. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (Mar), 142-143.
52. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: Virtual universities are not about to replace face-to-face teaching', Biochem Educ, 33 (Mar), 141.
53. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education: Websites of note', Biochem Educ, 33 (Jan), 71-73.
54. Parslow GR. (2005) 'Multimedia in biochemistry and molecular biology education; Commentary: E-mail works for me', Biochem Educ, 33 (Jan), 63-64.
55. Perry AJ, Lithgow T. (2005) 'Protein targeting: Entropy, energetics and modular machines', Curr Biol, 15, R423-R425.
56. Perry AJ, Hulett JM, Lithgow T, Gooley PR (2005) 'Letter to the Editor: 1H, 13C and 15N Resonance assignments of the cytosolic domain of Tom20 from Arabidopsis thaliana', J Biomol NMR (in press).
57. Perugini MA, Griffin MD, Smith BJ, Webb LE, Davis AJ, Handman E, Gerrard JA. (2005) 'Insight into the self-association of key enzymes from pathogenic species', Eur Biophys J, 34(5), 469-476. Epub 2005 Jun 25.
58. Petersen JL, Hickman-Miller HD, McIlhaney MM, Vargas SE, Purcell AW, Hildebrand WH, Solheim JC (2005) 'A charged amino acid residue in the transmembrane/cytoplasmic region of tapasin influences MHC class I assembly and maturation', J Immunol, 174(2), 962-969.
59. Richardson SJ. (2005) 'Expression of transthyretin in the choroid plexus: Relationship to brain homeostasis of thyroid hormones'. In: “The Blood-Cerebrospinal Fluid Barrier”. Zheng W and Chodobski A. eds. CRC Press. Boca Raton. pp275-304.
60. Richardson SJ, Hennebry SC, Smith BJ, Wright HM. (2005) 'Evolution of the thyroid hormone distributor protein transthyretin in microbes, C.elegans and vertebrates', Ann NY Acad Sci, 1040, 448-451.
61. Richardson SJ, Monk JA, Shepherdley CA , Ebbesson LAO, Sin F, Power DM, Frappell PB, Köhrle J, Renfree MB. (2005) 'Developmentally regulated thyroid hormone distributor proteins in marsupials, reptile and fish', Am J Physiol, 288, R1264-R1272.
62. Sanders PR, Gilson PR, Cantin GT, Greenbaum DC, Nebl T, Carucci DJ, McConville MJ, Schofield L, Hodder AN, Yates JR 3rd, Crabb BS. (2005) 'Distinct protein classes including novel merozoite surface antigens in raft-like membranes of Plasmodium falciparum', J Biol Chem, 280(48), 40169-40176.
63. Satkunanathan N, Livett B, Gayler K, Sandall D, Down J, Khalil Z. (2005) 'Alpha conotoxin Vc1.1. alleviates neuropathic pain and accelerates functional recovery of injured neurones', Brain Res, 1059, 149-158.
64. Sesma L, Galocha B, Vázquez M, Purcell AW, Marcilla M, McCluskey J. López de Castro JA. (2005) 'Qualitative and quantitative differences in peptides bound to HLA-B27 in the presence of mouse versus human tapasin define tapasin's role as a size-dependent peptide editor', J Immunol, 174, 7833-7844.
65. Shankar R, Gude N, Cullinane F, Brennecke S, Purcell AW, Moses EK. (2005) 'An emerging role for comprehensive proteome analysis in human pregnancy research', Reproduction, 129, 685-696.
66. Stanley I (2005) 'Combio2005 Biochemical education workshop: assessment and teaching large classes', Aust Biochemist, 36(3), 25-26.
67. Stewart CR, Tseng AA, Mok YF, Staples MK, Schiesser CH, Lawrence LJ, Varghese JN, Moore KJ, Howlett GJ. (2005) 'Oxidation of low-density lipoproteins induces amyloid-like structures that are recognized by macrophages', Biochemistry, 44(25), 9108-9116.
68. Swarbrick JD, Buyya S, Gunawardana D, Fletcher JI, Branson K, Smith B, Pepe S, McLennan AG, Gayler KR, Gooley PR. (2005) 'Letter to the Editor: 1H, 13C and 15N resonance assignments of the 17 kDa Ap4A hydrolase from homo sapiens in the presence and absence of ATP', J Biomol NMR, 31, 181-182.
69. Swarbrick JD, Buyya S, Gunawardana D, Gayler KR, McLennan AG, Gooley PR. (2005) 'Structure and substrate binding mechanism of human Ap4A hydrolase', J Biol Chem, 280, 8471-8481.
70. Turner BJ, Atkin JD, Farg MA, Zang da W, Rembach A, Lopes EC, Patch JD, Hill AF, Cheema SS. (2005) 'Impaired extracellular secretion of mutant superoxide dismutase 1 associates with neurotoxicity in familial amyotrophic lateral sclerosis', J Neurosci, 25(1), 108-117.
71. Turner SJ, Kedzierska K, Komodromou H, La Gruta NL, Dunstone MA, Webb AI, Webby R, Walden H, Xie W, McCluskey J, Purcell AW, Rossjohn J, Doherty PC. (2005) 'Lack of prominent peptide/MHC features limits T cell repertoire diversity for virus-specific CD8+ T cells', Nature Immunol, 6(4), 382-389.
72. Tynan FE, Miles JJ, Borg NA, Beddoe T, Elhassen D, Silins SL, van Zuylen .JM., Purcell AW, Kjer-Nielsen L, McCluskey J, Burrows SR, Rossjohn J. (2005) 'The high resolution structures of highly bulged viral epitopes bound to the major histocompatibility class I: Implications for T-cell receptor engagement and T-cell immunodominance', J Biol Chem, 280, 23900-23909.
73. Tynan FE, Buckle AM, Burrows SR, Clements CS, Borg NA, Miles JJ, Beddoe T, Whisstock JC, Wilce MC, Silins SL, Burrows JM, Kjer-Nielsen L, Kostenko L, Purcell AW, McCluskey J, Rossjohn J. (2005) 'TCR recognition of a super-bulged MHC-I viral epitope maintains MHC-restriction', Nature Immunol, 6, 1114-1122.
74. Tynan F, Elhassen D, Purcell AW, Burrows JM, Borg NA, Miles JJ, Williamson NA, Green KJ, Tellam J, Kjer-Nielsen L, McCluskey J, Rossjohn J, Burrows SR. (2005) 'The immunogenicity of a viral cytotoxic T Cell epitope is controlled by its MHC-bound conformation', J Exp Med, 202, 1249-1260.
75. Uren R, Bonzon C, Lithgow T, Newmeyer DD, Kluck RM. (2005) 'Mitochondrial release of pro-apoptotic proteins: electrostatic interactions can hold cytochrome c but not Smac/DIABLO to mitochondrial membranes', J Biol Chem, 280, 2266-2274.
76. van Driel IR, Read S, Zwar TD, Gleeson PA. (2005) 'Shaping the T cell repertoire to a bona fide autoantigen: lessons from autoimmune gastritis', Curr Opin Immunol, 7(6), 570-576.
77. Webb AI, Dunstone MA, Williamson NA, Price JD, de Kauwe A, Chen W, Oakley A, Perlmutter P, Aguilar MI, McCluskey J, Rossjohn J, Purcell AW. (2005) 'T cell determinants incorporating ß-amino acid residues are protease resistant and remain immunogenic in vivo', J Immunol, 175, 3810-3818.
78. Williamson NA, Purcell AW (2005) 'The use of proteomics to define targets of immunity', Expert Rev Proteomics, 2(3), 407-420.
79. Wilmann PG, Petersen J, Pettikiriarachchi A, Buckle AM, Smith SC, Olsen S, Perugini MA, Devenish RJ, Prescott M, Rossjohn J. (2005) 'The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore', J Mol Biol, 349(1), 223-237. Epub 2005 Mar 22.
80. Yuan FF, Biffin S, Brazier MW, Suarez M, Cappai R, Hill AF, Collins SJ, Sullivan JS, Middleton D, Multhaup G, Geczy AF, Masters CL. (2005) Detection of prion epitopes on PrP and PrP of transmissible spongiform encephalopathies using specific monoclonal antibodies to PrP', Immunol Cell Biol, 83(6), 632-637.

Publications - 2004

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